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CBRC News

Latest activities at The Computational Biology Research Center


2nd ICoBi Workshop Videos

Sequence Comparison without Alignment: The SpaM Approaches by Dr. Burkhard Morgenstern

2nd International Computational Biology Workshop of the Amirkabir University of Technology videos are now available.

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13/08/2021

2nd ICoBi Workshop Videos

Assessing the Impact of Exact Reads On Reducing the Error Rate of Read Mapping by Dr. Farzaneh Salari

2nd International Computational Biology Workshop of the Amirkabir University of Technology videos are now available.

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14/07/2021

2nd ICoBi Workshop Videos

Predicting Risk of Cardiovascular Disease Using Machine Learning Methods by Dr. Hesam Dashti

2nd International Computational Biology Workshop of the Amirkabir University of Technology videos are now available.

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12/06/2021

softwares

TranDTA: Prediction of Drug–Target Binding Affinity Using Transformer Representations by Mahsa Sa'adat

TranDTA is the first method that applies transformers to extract feature of protein sequence and uses transformer representations in drug target binding affinity (DTBA) prediction. This model only uses inputs as 1D representations. It can also be run without limitations on resources (memory, CPU and GPU) due to the use of pretrained representations for inputs. This model can be helpful in drug development process.

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31/05/2021

softwares

Analyzing critical node detection problem and gene essentiality in PPI networks by Dr. Javad Rezaei

The data set used in the paper contains the PPI networks of E. coli and S. cerevisiae which are extracted from the Database of Interacting Proteins (DIP). To label the proteins as essential/non-essential, the essential genes data of these species are collected from DEG database.

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25/05/2021

2nd ICoBi Workshop Videos

Characterizing SARS-CoV-2 Mutations in Iranian Related COVID-19 Patients by Dr. Najmeh Salehi

2nd International Computational Biology Workshop of the Amirkabir University of Technology videos are now available.

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13/05/2021

2nd ICoBi Workshop Videos

Feasibility of Predicted Metabolic Engineering Strategies by Dr. Zahra Razaghi Moghadam Kashani

2nd International Computational Biology Workshop of the Amirkabir University of Technology videos are now available.

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10/04/2021

2nd ICoBi Workshop Videos

Systems Biology and Inference of Gene Regulatory Networks by Dr. Mehdi Sadeghi

2nd International Computational Biology Workshop of the Amirkabir University of Technology videos are now available.

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24/01/2021

Pre Workshop

Third day of ICoBi Workshop

International Computational Biology Pre Workshop

Topics and Speakers:

  • Multiomics Analysis of Pregnancy-Related Pathologies represented by Dr. Nima Aghaeepour
  • Genomic Alterations and Cancer Initiation: An Experience with Papillary Thyroid Carcinoma represented by Dr. Nazanin Hosseinkhan
  • Introduction to the Structure and Pathogenesis of Helicobacter Pylori represented by Dr. Bahareh Attaran
  • Supervised Learning of Gene-Regulatory Networks Based On Graph Distance Profiles of Transcriptomics Data represented by Dr. Zoran Nikoloski
  • Essential Gene Prediction represented by Dr. Fatemeh Zare-Mirakabad


Location : Online via Adobe Connect
Time : Friday 11 December 2020 at 9:00 - 18:00

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11/12/2020

Pre Workshop

Second day of ICoBi Workshop

International Computational Biology Pre Workshop

Topics and Speakers:

  • Assessing the Impact of Exact Reads On Reducing the Error Rate of Read Mapping represented by Dr. Farzaneh Salari
  • Sequence Comparison without Alignment: The SpaM Approaches represented by Dr. Burkhard Morgenstern
  • R2DT: A New Method for Visualising RNA Secondary Structure in Standard Orientations represented by Dr. Anton Petrov
  • Ensemble Multi-Label Learning For Protein Functional Classification represented by Dr. Abbas Nowzari-Dalini


Location : Online via Adobe Connect
Time : Thursday 10 December 2020 at 9:00 - 17:00

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10/12/2020

Workshop

First day of ICoBi Workshop

International Computational Biology Pre Workshop

Topics and Speakers:

  • Systems Biology and Inference of Gene Regulatory Networks represented by Dr. Mehdi Sadeghi
  • Feasibility of Predicted Metabolic Engineering Strategies represented by Dr. Zahra Razaghi
  • Characterizing SARS-CoV-2 Mutations in Iranian Related COVID-19 Patients represented by Dr. Najmeh Salehi
  • Predicting Risk of Cardiovascular Disease Using Machine Learning Methods represented by Dr. Hesam Dashti


Location : Online via Adobe Connect
Time : Wednesday 09 December 2020 at 9:00 - 17:00

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09/12/2020

Pre Workshop

ICoBi - Pre Workshop Videos

International Computational Biology Pre Workshop of the Amirkabir University of Technology videos are now available.

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04/12/2020

Pre Workshop

Second day of ICoBi - Pre Workshop

International Computational Biology Pre Workshop

Location : Online via Adobe Connect
Time : 15:00 - 19:00

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03/12/2020

Pre Workshop

First day of ICoBi - Pre Workshop

International Computational Biology Pre Workshop

Location : Online via Adobe Connect
Time : 15:00 - 19:00

More Info

02/12/2020

Pre Workshop

ICoBi - Pre Workshop registration

International Computational Biology Pre Workshop

Location : Online via Adobe Connect
Time : 2 to 3 December 2020

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22/11/2020

Drug Discovery

Weekly online Seminars - Find the appropriate compositions for drug discovery

represented by Mehdi Paykan Heyrati
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 18 Nov , 18:30 – 19:30

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18/11/2020

Prediction of microRNA-Disease Associations

Weekly online Seminars - Prediction of microRNA-Disease Associations

represented by Sohrab Salehi
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 11 Nov , 18:30 – 19:30

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07/11/2020

Workshop

ICoBi registration

International Computational Biology Workshop

Location : Online via Adobe Connect
Time : 9 to 11 December 2020

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05/11/2020

Adverse Drug Reaction prediction

Weekly online Seminars - Adverse Drug Reaction prediction

represented by Milad Besharatifard
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 04 Nov , 18:30 – 19:30

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31/10/2020

Drug-target binding affinity prediction

Weekly online Seminars - Drug-target binding affinity prediction

represented by Mahsa Sa'adat
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 28 Oct , 18:30 – 19:30

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24/10/2020

Protein design

Weekly online Seminars - Protein design

represented by Amin Rahmani
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 21 Oct , 18:30 – 19:30

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17/10/2020

RNA design

Weekly online Seminars - RNA design

represented by Sara Nourizadeh
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 14 Oct , 18:30 – 19:30

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12/10/2020

Challenges

Bioinformatics Challenges

Speaker: Dr. Fatemeh Zare-Mirakabad
You can see Machine Learning applications in Bioinformatics and challenges to be in through to solve problems.

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10/10/2020

Drug Repositioning

Weekly online Seminars - Drug repositioning

represented by Zahra Ghorbanali
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 07 Oct , 18:30 – 19:30

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07/10/2020

COVID-19

Coronavirus disease (COVID-19)

Speaker: Dr. Fatemeh Zare-Mirakabad & Yasin Rahmani
COVID-19 is an infectious disease caused by the most recently discovered coronavirus. This new virus and disease were unknown before the outbreak began in Wuhan, China, in December 2019. COVID-19 is now a pandemic affecting many countries globally.
Know about COVID-19.

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05/10/2020

Gene Expression

Weekly online Seminars - Gene Expression Analysis Using Topological Properties of Co-Expression Networks

represented by Maryam Rastegari
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 30 Sep , 18:30 – 19:30

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30/9/2020

Mutation Signatures

Weekly online Seminars - Discovering novel mutation signatures using compound latent Dirichlet allocation

represented by Mina Shaigan
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.
Time : 23 Sep , 18:30 – 19:30

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23/9/2020

seminar 2020

Weekly online Seminars

As a consequence of the COVID-19 crisis, CBRC has been moved to as online weekly seminar event starting in Autumn 2020.
Wednesdays, 18:30 – 19:30
The meeting will be held virtually over Adobe Connect.
These webinars are open to members of the University and to the general public. This event is free but requires Registration.

More Info

16/9/2020

ICoBi Workshop Videos

ICoBi Workshop Videos

International Computational Biology Workshop of the Amirkabir University of Technology videos are now available.

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23/05/2020

Gene Regulatory Network Reconstruction

Gene Regulatory Network Reconstruction by Dr. Fatemeh Zare- Mirakabad

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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22/05/2020

Identifying Subnetworks In Metabolic Networks

Identifying Subnetworks In Metabolic Networks by Dr. Changiz Eslahchi

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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21/05/2020

A Systems Approach to Modeling Cell-Specific Metabolic Networks

A Systems Approach to Modeling Cell-Specific Metabolic Networks by Dr. Sayed-Amir Marashi

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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20/05/2020

Alignment-free sequence comparison

Alignment-free sequence comparison using maximal common substrings by Dr. Burkhard Morgenstern

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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19/05/2020

Protein Engineering

Protein Engineering by Dr. Shahriar Arab

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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18/05/2020

ICoBi Workshop Videos

Stay Home & Watch:

ICoBi Pre Workshop and Workshop Videos

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05/05/2020

repairing DNA double strand breaks

Modeling the process of repairing DNA double strand breaks during the cell cycle

represented by Fazeleh Sadat Mohseni-Salehi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 311
Time : 27 Jan , 15 – 16

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26/01/2020

RNA-RNA Interaction

Two Seminars each month - RNA-RNA Interaction

represented by Mohammad Foad Abdi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 30 Dec , 13 – 15

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30/12/2019

RNA-RNA Interaction

RNA-RNA Interaction Seminar cancelled

Due to increased air pollution, kindergartens, preschools and schools, universities and higher education institutes of Tehran province will be closed tomorrow.


15/12/2019

RNA-RNA Interaction

Two Seminars each month - RNA-RNA Interaction

represented by Mohammad Foad Abdi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 16 Dec , 13 – 15

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14/12/2019

RNA 3D structure prediction

Two Seminars each month - RNA 3D Structure Prediction

represented by Parham Hafezi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 02 Dec , 13 – 15

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26/11/2019

Drug design

Two Seminars each month - Computational Drug Design

represented by Dr. Sajjad Gharaghani
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 18 Nov , 13 – 15

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15/11/2019

Drug Repositioning

Two Seminars each month - Drug Repositioning

represented by Dr. Fatemeh Zare-Mirakabad
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 04 Nov , 13 – 15

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02/11/2019

DNA Damage

Two Seminars each month - DNA Damage Random Modeling

represented by Fazeleh Sadat Mohseni-Salehi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 21 Oct , 13 – 15

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21/10/2019

Drug Design

Drug Design for Alzheimer by Dr. Sajjad Gharaghani

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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12/10/2019

Genome Assembly

Two Seminars each month - Genome Assembly

represented by Farzane Salari
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 7 Oct , 13 – 15

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7/10/2019

seminar 2019

Two Seminars each month

This seminars held in
Amirkabir University Of Technology,
Department Of Mathematics & Computer Science,
room 313, Autumn 2019,
Mondays, 13:00 – 15:00

More Info

29/9/2019

Breast Cancer

breast cancer drug (ICD-85) discovery by Dr. Abbas Zare-Mirakabadi

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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15/5/2019

RNA SEQ

Stochastic Modeling of DNA damages by Dr. Fazeleh Sadat Mohseni-Salehi

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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5/10/2018

RNA SEQ

RNA-SEQ: Read Alignment and Mapping by Dr. Mehdi Sadeghi

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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30/7/2018

RNA Design

(Positive) Design of RiboNucleic Acids by Dr. Yann Ponty

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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24/5/2018

cell identity

Using Deep Neural Networks to Reveal Cell Identity from Gene Expression Profiles by Dr. Ali Sharifi Zarchi

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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6/4/2018

spaced words

Spaced Words for Alignment-free Sequence Comparison and Read Mapping by Dr. Burkhard Morgenstern

International Computational Biology Workshop of the Amirkabir University of Technology video is now available.

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11/3/2018

deep learning

ICoBi Pre Workshop Videos

International Computational Biology Pre Workshop of the Amirkabir University of Technology videos are now available.

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8/3/2018

deep learning

ICoBi Workshop Presentations

International Computational Biology Workshop of the Amirkabir University of Technology presentations are now available.

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5/3/2018

deep learning

Computational Methods on a System Level: PPI Networks by Morteza Kouhsar

International Computational Biology PreWorkshop of the Amirkabir University of Technology video is now available.

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24/2/2018

deep learning

Computational methods on Gene regulatory networks by Mahya Moshref

International Computational Biology PreWorkshop of the Amirkabir University of Technology video is now available.

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21/2/2018

deep learning

Computational Methods on a System Level Metabolic Network by Javad Rezaei

International Computational Biology PreWorkshop of the Amirkabir University of Technology video is now available.

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19/2/2018

deep learning

Deep Learning as a Tool by Bahram Mohammadpour Esfahani

International Computational Biology PreWorkshop of the Amirkabir University of Technology video is now available.

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17/2/2018

deep learning

Two Seminars each month - Transcription Factors Binding Sites Prediction Using Deep Neural Networks

represented by Hossein Banki Kashki
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 3 Jan , 16:30 – 18

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3/1/2018

deep learning

Two Seminars each month - RNA Structure Prediction using Neural Network

represented by Mohadeseh Lotfi & AmirHossein Roozbahany
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 27 Dec , 16:30 – 18

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27/12/2017

deep learning

Two Seminars each month - Genome Assembly

represented by Shohre Masoumi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 311
Time : 19 Dec , 16:30 – 18

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19/12/2017

deep learning

ICoBi Pre Workshop Presentations

International Computational Biology Pre Workshop of the Amirkabir University of Technology presentations are now available.

Download

17/12/2017

deep learning

International Computational Biology Workshop Certification

You can get your certification from department of Mathematics & Computer Science, second floor, room 321 - 322.
( please call +98 216 454 5674 before you come )


15/12/2017

workshop info

ICoBi Workshop Information

International Computational Biology Workshop Information

Workshop exact time and location

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10/12/2017

deep learning

ICoBi Workshop

International Computational Biology Workshop

Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 312
Time : 12 to 14 December 2017

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9/12/2017

deep learning

Two Seminars each month - Inverse Protein Folding

represented by Marziyeh Movahedi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 312
Time : 29 Nov , 16:30 – 17:15

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29/11/2017

deep learning

Two Seminars each month - Reconstruction of Gene Regulatory Networks using Microarray Data

represented by Mahya Moshraf
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 15 Nov , 16:30 – 17:15

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15/11/2017

deep learning

Two Seminars each month - Reconstruction of Haplotypes

represented by Samin Jamshidi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 25 Oct , 16:30 – 17:15

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25/10/2017

deep learning

Two Seminars each month - RNA-RNA Interaction

represented by Parham Hafezi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 313
Time : 25 Oct , 17:15 – 18

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25/10/2017

deep learning

Two Seminars each month - Identify the relationships between drugs and diseases using machine learning

represented by Mahro moridi
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 312
Time : 11 Oct , 16:30 – 18

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11/10/2017

deep learning

Two Seminars each month - Phylogenetic trees based on repeated clustering

represented by Bita Pourmohsenin
Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science , room 311
Time : 27 Sep , 16:30 – 18

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27/9/2017

deep learning

Two Seminars each month

This seminars held in
Amirkabir University Of Technology,
Department Of Mathematics & Computer Science,
room 311, Autumn 2017,
Wednesdays, 16:30 – 18:30

More Info

23/9/2017

deep learning

CBRC

Computational Biology Research Center

CBRC develops novel algorithms and software for computational analysis of bioinformatics data


12/4/2014

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