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A Siamese Neural Network for Predicting snoRNA-Disease Association
Small nucleolar RNAs (snoRNAs) are essential in biological processes and are linked to diseases such as cancer and neurodegenerative …
Milad Besharatifard
,
Fatemeh Zare-Mirakabad
Cite
DOI
A novel approach to find Biomarkers affecting Autism Spectrum Disorder (ASD) Using Machine Learning
Autism Spectrum Disorder (ASD) is a neurodevelopmental condition that presents with challenges in social interaction, communication, …
Amir Zarghami
,
Milad Besharatifard
,
Fatemeh Zare-Mirakabad
Cite
CIVILICA
Designing Guide RNAs Considering Essential Genes for Genome Editing of Yarrowia lipolytica Using Deep Learning in the CRISPR System
The CRISPR/Cas system is used to precisely remove and add one or more genes to the genome. In this system, a protein called Cas is …
Z. Vahdani
,
F. Darvishi
,
Fatemeh Zare-Mirakabad
Cite
CIVILICA
Discovering Moonlighting Proteins with AI and Explainability
Moonlighting proteins perform multiple, distinct biological functions beyond their primary role, posing challenges in traditional …
Masoud Madavifara
,
Milad Beshartifarda
,
Fatemeh Zare-Mirakabad
Cite
CIVILICA
Enhancing Predictive Accuracy of CRISPR-Cas9 on-target efficiency using Deep Learning and Active Learning Optimization for Small Datasets
The CRISPR-Cas9 gene editing system has revolutionized genetics, but predicting sgRNA cleavage efficiency remains a challenge, …
Masoud Madavifara
,
Fatemeh Zare-Mirakabad
Cite
CIVILICA
Identification of driver genes in glioblastoma based on single-cell gene expression data using integrated pseudotime and phylogenetic analysis
Cancer encompasses a group of diverse diseases characterized by uncontrolled cell growth that can invade nearby tissues. Despite …
Fateme Mirza-Abolhassani
,
Sobhan Ahmadian Moghadam
,
Fatemeh Zare-Mirakabad
,
Kaveh Kavousi
Cite
CIVILICA
In-silico drug generation using masked language modeling
De novo drug discovery is a complex, costly, and time-intensive process involving several phases, such as target discovery, screening, …
Seyed Hassan Alavi
,
Zahra Ghorbanali
,
Fatemeh Zare-Mirakabad
Cite
CIVILICA
Integrating Biological Networks and Deep Learning for Microbe -Disease Prediction
The human microbiome, consisting of diverse microbial communities, plays a crucial role in health and disease. Identifying associations …
Sobhan Ahmadian Moghadam
,
Zahra Ghorbanali
,
Hesam Montazeri
,
Fatemeh Zare-Mirakabad
Cite
CIVILICA
Targeting Protein in Neurodegenerative Diseases: A Computational Approach
Neurodegenerative diseases, including Alzheimer’s, Parkinson’s, Huntington’s, and amyotrophic lateral sclerosis (ALS), pose significant …
Reyhaneh Ebrahimi
,
Seyed Hassan Alavi
,
Fayaz Soleymani
,
Fatemeh Zare-Mirakabad
Cite
CIVILICA
A Siamese neural network for immunotherapy response prediction
Immune checkpoint inhibitors (ICIs) have emerged as groundbreaking treatments for varioustypes of cancer. However, only a portion of …
Reyhaneh Mortezaee
,
Fatemeh Zare-Mirakabad
Cite
CIVILICA
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