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CBRC Thesis Defenses


PhD Students

DNA damage

Modeling the process of repairing DNA double strand breaks during the cell cycle

represented by Fazeleh Sadat Mohseni-Salehi

Supervisor:
Dr. Fatemeh Zare-Mirakabad

Co-supervisors:
Dr. Soudeh Ghafouri-Fard, Dr. Mehdi Sadeghi

Internal Examiners:
Dr. Ali Mohades, Dr. Mostafa Shamsi

External Examiners:
Dr. Changiz Eslahchi, Dr. Rouzbeh Tusserkani, Dr. Gholamreza Pazoki

Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science, room 311
Time : 27 Jan 2020, 15 – 16

reads Mapping and genome assembly

reads Mapping and genome assembly using reference in new generation sequencing technologies

represented by Farzaneh Salari

Supervisor:
Dr. Fatemeh Zare-Mirakabad, Dr. Mehdi Sadeghi

Co-supervisors:
Dr. Hassan Rokni-Zadeh

Internal Examiners:
Dr.Mohammad Ebrahim Shiri, Dr. Farzad Didehvar

External Examiners:
Dr. Changiz Eslahchi, Dr. Seyed Abolfazl Motahari

Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science, room 313
Time : 14 Oct 2019, 18:30 – 19:30

Master Students

RNA 3D structure prediction

RNA 3D structure prediction using neural networks

represented by Parham Hafezi

Supervisor:
Dr. Fatemeh Zare-Mirakabad, Dr. Ali Mohades

Internal Examiners:
Dr. Mohammad Hassan Shirali-Shahreza

External Examiners:
Dr. S. Shahriar Arab

Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science, room 313
Time : 15 Feb 2020 , 11:30 – 12:30

prediction of protein-protein interaction sites

prediction of protein-protein interaction sites from geometric features

represented by Mahbobeh Sharifian Esfahani

Supervisor:
Dr. Fatemeh Zare-Mirakabad, Dr. Ali Mohades

Co-supervisors:
Dr. Abbas Nowzari-Dalini

Internal Examiners:
Dr. Saeed Shiry Ghidary

External Examiners:
Dr. S. Shahriar Arab

Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science, room 313
Time : 18 Feb 2019 , 18:30 – 19:30

Detection of cancer cells

Detection of cancer cells in blood tests using image processing techniques

represented by Mahsa Abotalebi Nasrabad

Supervisor:
Dr.Mohammad Ebrahim Shiri

Co-supervisors:
Dr. Fatemeh Zare-Mirakabad

Internal Examiners:
Dr. Ali Mohades

External Examiners:
Dr. Hedieh Sajedi

Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science, room 313
Time : 16 Feb 2019 , 11 – 12

cancer simulation

Parameterization of the underlying factors involved in cancer simulation

represented by Mohammad Javad Sabbaghzade

Supervisor:
Dr. Fatemeh Zare-Mirakabad

Internal Examiners:
Dr. Mehdi Ghatee

External Examiners:
Dr. Abbas Nowzari-Dalini

Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science, room 311
Time : 22 Oct 2018 , 18:30 – 19:30

Predicting reverse protein folding

Predicting reverse protein folding based on polymers in PDB

represented by Arefe Alikhani

Supervisor:
Dr. Fatemeh Zare-Mirakabad, Dr. Mostafa Shamsi

Co-supervisors:
Dr. S. Shahriar Arab

Internal Examiners:
Dr. Ali Mohades

External Examiners:
Dr. Kaveh Kavoosi

Location : Amirkabir University Of Technology, Department Of Mathematics & Computer Science, room 313
Time : 08 Oct 2018 , 16 – 17

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