RNA Resources Project Leader in European Bioinformatics Institute at European Molecular Biology Laboratory, Cambridge, UK
Research interest(s):
Bioinformatics
Computational Biology
RNA Biology
ncRNA Discovery
Functional Annotation of Genomes
RNA Nanotechnology
Recent Papers:
Sweeney, B. A., Tagmazian, A. A., Ribas, Finn, R. D., Bateman, A., Petrov, A. I. “Exploring Non‐Coding RNAs in RNAcentral“. Current Protocols in Bioinformatics. 71(1): e104 (2020).
Hufsky, F., Lamkiewicz, K., Almeida, A., Aouacheria, A., Arighi, C., Bateman, A. et al. “Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research“. Preprints. (2020).
Sweeney, B. A., Hoksza, D., Nawrocki, E. P., Ribas, C. E., Madeira, F., Cannone, F. F. et al. “R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types“. bioRxiv. (2020).
Kalvari, I., Nawrocki, E. P., Argasinska, J., Quinones‐Olvera, N., Finn, R. D. et al. “Non‐Coding RNA Analysis Using the Rfam Database“. Current protocols in bioinformatics. 62(1): e51 (2018).
Roll, J., Zirbel, C. L., Sweeney, B., Petrov, A. I., Leontis, N. “JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs“. Nucleic acids research. 44(W1): W320-W327 (2016).
Zirbel, C. L., Roll, J., Sweeney, B. A., Petrov, A. I., Pirrung, M., Leontis, N. B. “Identifying novel sequence variants of RNA 3D motifs“. Nucleic acids research. gkv651 (2015).
Cannone, J. J., Sweeney, B. A., Petrov, A. I., Gutell, R. R., Zirbel, C. L., Leontis, N. “R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server“. Nucleic acids research. gkv543 (2015).